Tests and Confidence Intervals on Directly Standardized Rates for Several Methods (dsrTest)
Perform a test of a simple null hypothesis about a directly standardized rate and obtain the matching confidence interval using a choice of methods.

Fitting Flexible Smooth-in-Time Hazards and Risk Functions via Logistic and Multinomial Regression (casebase)
Implements the case-base sampling approach of Hanley and Miettinen (2009) <DOI:10.2202/1557-4679.1125>, Saarela and Arjas (2015) <DOI:10.1111/sjos.12125>, and Saarela (2015) <DOI:10.1007/s10985-015-9352-x>, for fitting flexible hazard regression models to survival data with single event type or multiple competing causes via logistic and multinomial regression. From the fitted hazard function, cumulative incidence, risk functions of time, treatment and profile can be derived. This approach accommodates any log-linear hazard function of prognostic time, treatment, and covariates, and readily allows for non-proportionality. We also provide a plot method for visualizing incidence density via population time plots.

Multiple Hypotheses Testing for Multiple Families/Groups Structure (MHTmult)
A Comprehensive tool for almost all existing multiple testing methods for multiple families. The package summarizes the existing methods for multiple families multiple testing procedures (MTPs) such as double FDR, group Benjamini-Hochberg (GBH) procedure and average FDR controlling procedure. The package also provides some novel multiple testing procedures using selective inference idea.

Pairwise Likelihood Ratios (mut)
Main function LR2 calculates likelihood ratio for non-inbred relationships accounting for mutation, silent alleles and theta correction. Egeland, Pinto and Amorim (2017) <DOI:10.1016/j.fsigen.2017.04.018>.

Fast Onehot Encoding for Data.frames (onehot)
Quickly create numeric matrices for machine learning algorithms that require them. It converts factor columns into onehot vectors.